I found these online and figured I would share them here:

Adjusting Both Glass Slide/Tilt Sunroof Lids


Adjusting Both Glass Slide/Tilt Sunroof Lids
54 13 002 Adjusting Both Glass Slide/tilt Sunroof Lids

Special tools required:
00 9 315
00 9 340
Necessary preliminary tasks:
Close glass slide/tilt sunroof completely
If the glass slide/tilt sunroof is outside the adjustment tolerances, adjust as follows:

Installation:
Microencapsulated screws (Loctite) must be replaced and may not be reused
Screw connection must be completed within 20 minutes (start of curing)
Microencapsulated screws must not be retightened
Clean thread of nut beforehand in event of repeated use
Adjusting glass slide/tilt sunroof unit:




Carry out the following step on one side first and then the other (first left, then right or vice versa):
Slacken Torx screws (1) on left/right so that glass roof panel can still just be adjusted.
Move glass roof panel as required.
Make sure all screws are tightened down.
Tightening torque
4AZ Glass panel to mechanism 4 Nm
Type: R50 / R53 / R56
NOTE: Replace screws.

Repeat procedure on other side.
Distance setting:




Check same gap of glass lid and body with special tool 00 9 340.
Slide special tool 00 9 340 or similar between seal and insert. It must be possible to slide the card against the same level of resistance.
Slide glass lid towards front or rear until ideal position is reached.

Height adjustment:

NOTE: Front glass lid must be adjusted first.




Check height of glass lid (1) in relation to body (2) with special tool 00 9 315.
Press glass lid (1) at front and rear towards top or bottom until ideal position is reached.

Height:
Front edge of glass lid at front 0 to 1 mm under roof edge
Rear edge of glass lid at front 0 to 0.5 mm over glass lid at rear
Rear edge of glass lid at rear 0 to 1 mm over roof edge
Check function and adjustment.

 

Wanted to add an update to these findings. A little backstory about my '08 MCS. I bought it used about three months ago and my one big complaint was excessive noise from the front edge of the sunroof and a rattle from the sunroof. I implemented these specs for adjustment and in place of the tool to feel the gap resistance, I used a piece of cardstock. My rattle is gone and the wind noise has been cut down substantially. the front gap was not tight enough and the levelness relative to the roof was not even close anywhere. I am a happy camper.